решил переделать, чтобы было 4 массива

bash/smake/smake.sh

@@ -129,6 +129,7 @@ echo "target_objs = \\" >> Makefile
 for to in $target_obj_lst; do
 	echo -e "\t$to \\" >> Makefile
 done
+echo >> Makefile
 
 echo '$(TARGET): $(target_objs)' >> Makefile
 echo -e '\t$(CC) $(LDFLAGS) -o $@ $(target_objs)' >> Makefile
@@ -145,13 +146,14 @@ for cf in `echo "$target_dep_lst" | grep -P '.c$'`; do
 		fi
 	done
 	if [ "$CF" == "" ]; then
-		files_not_dound="$files_not_found\n$cf"
+		files_not_found="$files_not_found\n$cf"
 		continue
 	fi
 
 	to=`basename "$cf" | sed 's~.c$~.o~'`
 
 	target_dep_lst="$CF "`remove_c_comments.pl $CF | grep -P '^[\t ]*#include[\t ]*"' | sed 's~[^"]*"\([^"]*\)".*~\1~' | sort -u`
+	old_target_dep_lst=
 	files_not_found=
 	while [[ "$target_dep_lst" != "$old_target_dep_lst" ]]; do
 		old_target_dep_lst=$target_dep_lst
@@ -174,9 +176,25 @@ for cf in `echo "$target_dep_lst" | grep -P '.c$'`; do
 		done
 	done
 
-	echo "$to: " >> Makefile
+	target_dep_lst=
+	for f in $old_target_dep_lst; do
+		F=""
+		for d in . $REP_INCLUDE; do
+			if [ -f "$d/$f" ]; then
+				F="$d/$f"
+				break
+			fi
+		done
+		if [ "$F" == "" ]; then
+			files_not_found="$files_not_found\n$f"
+			continue
+		fi
+		target_dep_lst=`echo "$F $target_dep_lst" | sed 's~ ~\n~g' | sort -u`
+	done
+
+	echo "$to: \\" >> Makefile
 	for td in $target_dep_lst; do
-		td=`echo "$td" | sed "s~^\./~~ ; s~${HOME}~$\(HOME\)~"`
+		td=`echo "$td" | sed "s~^\./~~ ; s~^\./~~ ; s~${HOME}~$\(HOME\)~"`
 		echo -e "\t$td \\" >> Makefile
 	done
 	echo >> Makefile