Amitha Perera 0e6b39e52f BUG: Correct some of the dependency analysis code.
- Make sure the original link line is untouched
- Avoid duplicating the link line when supporting version < 1.4
- Make sure the cyclic dependencies and such are output correctly in
  complicated cases.
- Avoid outputing dependencies that are already satisfied on the original
  link line when possible.
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