This reverts commit v3.1.0-rc1~557^2~2 (ClearMatches: Only clear matches
which were actually set, 2014-03-12). The optimization did not track
the match count in the same scope as the variables, allowing possible
inconsistency.
Resolve conflicts in Source/cmIfCommand.cxx, Source/cmMakefile.cxx,
and Source/cmMakefile.h by moving the changes to the new location
of the code involved.