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Convert builtin help to reStructuredText source files Run the convert-help.bash script to convert documentation: ./convert-help.bash "/path/to/CMake-build/bin" Then remove it.
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#.rst:
# ExternalData
# ------------
#
# Manage data files stored outside source tree
#
# Use this module to unambiguously reference data files stored outside
# the source tree and fetch them at build time from arbitrary local and
# remote content-addressed locations. Functions provided by this module
# recognize arguments with the syntax "DATA{<name>}" as references to
# external data, replace them with full paths to local copies of those
# data, and create build rules to fetch and update the local copies.
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
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#
# The DATA{} syntax is literal and the <name> is a full or relative path
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# within the source tree. The source tree must contain either a real
# data file at <name> or a "content link" at <name><ext> containing a
# hash of the real file using a hash algorithm corresponding to <ext>.
# For example, the argument "DATA{img.png}" may be satisfied by either a
# real "img.png" file in the current source directory or a "img.png.md5"
# file containing its MD5 sum.
#
# The 'ExternalData_Expand_Arguments' function evaluates DATA{}
# references in its arguments and constructs a new list of arguments:
#
# ::
#
# ExternalData_Expand_Arguments(
# <target> # Name of data management target
# <outVar> # Output variable
# [args...] # Input arguments, DATA{} allowed
# )
#
# It replaces each DATA{} reference in an argument with the full path of
# a real data file on disk that will exist after the <target> builds.
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
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#
# The 'ExternalData_Add_Test' function wraps around the CMake add_test()
# command but supports DATA{} references in its arguments:
Convert builtin help to reStructuredText source files Run the convert-help.bash script to convert documentation: ./convert-help.bash "/path/to/CMake-build/bin" Then remove it.
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#
# ::
#
# ExternalData_Add_Test(
# <target> # Name of data management target
# ... # Arguments of add_test(), DATA{} allowed
# )
#
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
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# It passes its arguments through ExternalData_Expand_Arguments and then
# invokes add_test() using the results.
#
Convert builtin help to reStructuredText source files Run the convert-help.bash script to convert documentation: ./convert-help.bash "/path/to/CMake-build/bin" Then remove it.
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# The 'ExternalData_Add_Target' function creates a custom target to
# manage local instances of data files stored externally:
#
# ::
#
# ExternalData_Add_Target(
# <target> # Name of data management target
# )
#
# It creates custom commands in the target as necessary to make data
# files available for each DATA{} reference previously evaluated by
# other functions provided by this module. A list of URL templates must
# be provided in the variable ExternalData_URL_TEMPLATES using the
# placeholders "%(algo)" and "%(hash)" in each template. Data fetch
# rules try each URL template in order by substituting the hash
# algorithm name for "%(algo)" and the hash value for "%(hash)".
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
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#
# The following hash algorithms are supported:
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#
# ::
#
# %(algo) <ext> Description
# ------- ----- -----------
# MD5 .md5 Message-Digest Algorithm 5, RFC 1321
# SHA1 .sha1 US Secure Hash Algorithm 1, RFC 3174
# SHA224 .sha224 US Secure Hash Algorithms, RFC 4634
# SHA256 .sha256 US Secure Hash Algorithms, RFC 4634
# SHA384 .sha384 US Secure Hash Algorithms, RFC 4634
# SHA512 .sha512 US Secure Hash Algorithms, RFC 4634
#
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
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# Note that the hashes are used only for unique data identification and
# download verification. This is not security software.
#
# Example usage:
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#
# ::
#
# include(ExternalData)
# set(ExternalData_URL_TEMPLATES "file:///local/%(algo)/%(hash)"
# "http://data.org/%(algo)/%(hash)")
# ExternalData_Add_Test(MyData
# NAME MyTest
# COMMAND MyExe DATA{MyInput.png}
# )
# ExternalData_Add_Target(MyData)
#
# When test "MyTest" runs the "DATA{MyInput.png}" argument will be
# replaced by the full path to a real instance of the data file
# "MyInput.png" on disk. If the source tree contains a content link
# such as "MyInput.png.md5" then the "MyData" target creates a real
# "MyInput.png" in the build tree.
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
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#
ExternalData: Improve series matching using an explicit syntax Automatic series recognition can generate false positives too easily when the default series configuration is flexible enough to handle common cases. Avoid false positives by requiring an explicit syntax to activate series recognition. Choose the syntax DATA{<name>,:} to be short, simple, and look like a vertical ellipsis. This allows us to improve the default series match configuration. Allow series references to contain one of the numbered file names. Allow '-' as a separator in addition to '.' and '_'. Document what the default configuration matches. Also provide more options to configure series <name> parsing.
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# The DATA{} syntax can be told to fetch a file series using the form
Convert builtin help to reStructuredText source files Run the convert-help.bash script to convert documentation: ./convert-help.bash "/path/to/CMake-build/bin" Then remove it.
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# "DATA{<name>,:}", where the ":" is literal. If the source tree
# contains a group of files or content links named like a series then a
# reference to one member adds rules to fetch all of them. Although all
# members of a series are fetched, only the file originally named by the
# DATA{} argument is substituted for it. The default configuration
# recognizes file series names ending with "#.ext", "_#.ext", ".#.ext",
# or "-#.ext" where "#" is a sequence of decimal digits and ".ext" is
# any single extension. Configure it with a regex that parses <number>
# and <suffix> parts from the end of <name>:
#
# ::
#
# ExternalData_SERIES_PARSE = regex of the form (<number>)(<suffix>)$
#
ExternalData: Improve series matching using an explicit syntax Automatic series recognition can generate false positives too easily when the default series configuration is flexible enough to handle common cases. Avoid false positives by requiring an explicit syntax to activate series recognition. Choose the syntax DATA{<name>,:} to be short, simple, and look like a vertical ellipsis. This allows us to improve the default series match configuration. Allow series references to contain one of the numbered file names. Allow '-' as a separator in addition to '.' and '_'. Document what the default configuration matches. Also provide more options to configure series <name> parsing.
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# For more complicated cases set:
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#
# ::
#
# ExternalData_SERIES_PARSE = regex with at least two () groups
# ExternalData_SERIES_PARSE_PREFIX = <prefix> regex group number, if any
# ExternalData_SERIES_PARSE_NUMBER = <number> regex group number
# ExternalData_SERIES_PARSE_SUFFIX = <suffix> regex group number
#
ExternalData: Improve series matching using an explicit syntax Automatic series recognition can generate false positives too easily when the default series configuration is flexible enough to handle common cases. Avoid false positives by requiring an explicit syntax to activate series recognition. Choose the syntax DATA{<name>,:} to be short, simple, and look like a vertical ellipsis. This allows us to improve the default series match configuration. Allow series references to contain one of the numbered file names. Allow '-' as a separator in addition to '.' and '_'. Document what the default configuration matches. Also provide more options to configure series <name> parsing.
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# Configure series number matching with a regex that matches the
# <number> part of series members named <prefix><number><suffix>:
Convert builtin help to reStructuredText source files Run the convert-help.bash script to convert documentation: ./convert-help.bash "/path/to/CMake-build/bin" Then remove it.
2013-10-15 19:17:36 +04:00
#
# ::
#
# ExternalData_SERIES_MATCH = regex matching <number> in all series members
#
ExternalData: Improve series matching using an explicit syntax Automatic series recognition can generate false positives too easily when the default series configuration is flexible enough to handle common cases. Avoid false positives by requiring an explicit syntax to activate series recognition. Choose the syntax DATA{<name>,:} to be short, simple, and look like a vertical ellipsis. This allows us to improve the default series match configuration. Allow series references to contain one of the numbered file names. Allow '-' as a separator in addition to '.' and '_'. Document what the default configuration matches. Also provide more options to configure series <name> parsing.
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# Note that the <suffix> of a series does not include a hash-algorithm
# extension.
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
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#
Convert builtin help to reStructuredText source files Run the convert-help.bash script to convert documentation: ./convert-help.bash "/path/to/CMake-build/bin" Then remove it.
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# The DATA{} syntax can alternatively match files associated with the
# named file and contained in the same directory. Associated files may
# be specified by options using the syntax
# DATA{<name>,<opt1>,<opt2>,...}. Each option may specify one file by
# name or specify a regular expression to match file names using the
# syntax REGEX:<regex>. For example, the arguments
#
# ::
#
# DATA{MyData/MyInput.mhd,MyInput.img} # File pair
# DATA{MyData/MyFrames00.png,REGEX:MyFrames[0-9]+\\.png} # Series
#
# will pass MyInput.mha and MyFrames00.png on the command line but
# ensure that the associated files are present next to them.
#
# The DATA{} syntax may reference a directory using a trailing slash and
# a list of associated files. The form DATA{<name>/,<opt1>,<opt2>,...}
# adds rules to fetch any files in the directory that match one of the
# associated file options. For example, the argument
# DATA{MyDataDir/,REGEX:.*} will pass the full path to a MyDataDir
# directory on the command line and ensure that the directory contains
# files corresponding to every file or content link in the MyDataDir
# source directory.
#
# The variable ExternalData_LINK_CONTENT may be set to the name of a
# supported hash algorithm to enable automatic conversion of real data
# files referenced by the DATA{} syntax into content links. For each
# such <file> a content link named "<file><ext>" is created. The
# original file is renamed to the form ".ExternalData_<algo>_<hash>" to
# stage it for future transmission to one of the locations in the list
# of URL templates (by means outside the scope of this module). The
# data fetch rule created for the content link will use the staged
# object if it cannot be found using any URL template.
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
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#
# The variable ExternalData_OBJECT_STORES may be set to a list of local
# directories that store objects using the layout <dir>/%(algo)/%(hash).
Convert builtin help to reStructuredText source files Run the convert-help.bash script to convert documentation: ./convert-help.bash "/path/to/CMake-build/bin" Then remove it.
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# These directories will be searched first for a needed object. If the
# object is not available in any store then it will be fetched remotely
# using the URL templates and added to the first local store listed. If
# no stores are specified the default is a location inside the build
# tree.
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
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#
# The variable ExternalData_SOURCE_ROOT may be set to the highest source
Convert builtin help to reStructuredText source files Run the convert-help.bash script to convert documentation: ./convert-help.bash "/path/to/CMake-build/bin" Then remove it.
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# directory containing any path named by a DATA{} reference. The
# default is CMAKE_SOURCE_DIR. ExternalData_SOURCE_ROOT and
# CMAKE_SOURCE_DIR must refer to directories within a single source
# distribution (e.g. they come together in one tarball).
#
# The variable ExternalData_BINARY_ROOT may be set to the directory to
# hold the real data files named by expanded DATA{} references. The
# default is CMAKE_BINARY_DIR. The directory layout will mirror that of
# content links under ExternalData_SOURCE_ROOT.
#
# Variables ExternalData_TIMEOUT_INACTIVITY and
# ExternalData_TIMEOUT_ABSOLUTE set the download inactivity and absolute
# timeouts, in seconds. The defaults are 60 seconds and 300 seconds,
# respectively. Set either timeout to 0 seconds to disable enforcement.
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
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#=============================================================================
# Copyright 2010-2013 Kitware, Inc.
#
# Distributed under the OSI-approved BSD License (the "License");
# see accompanying file Copyright.txt for details.
#
# This software is distributed WITHOUT ANY WARRANTY; without even the
# implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
# See the License for more information.
#=============================================================================
# (To distribute this file outside of CMake, substitute the full
# License text for the above reference.)
function(ExternalData_add_test target)
ExternalData: Preserve escaped semicolons during argument expansion The CMake language implicitly flattens lists so a ";" in a list element must be escaped with a backslash. List expansion removes backslashes escaping semicolons to leave raw semicolons in the values. Teach ExternalData_Add_Test and ExternalData_Expand_Arguments to re-escape semicolons found in list elements so the resulting argument lists work as if constructed directly by the set() command. For example: ExternalData_Add_Test(Data NAME test1 COMMAND ... "a\\;b") ExternalData_Expand_Arguments(Data args2 "c\\;d") add_test(NAME test2 COMMAND ... ${args2}) should be equivalent to set(args1 "a\\;b") add_test(NAME test1 COMMAND ... ${args1}) set(args2 "c\\;d") add_test(NAME test2 COMMAND ... ${args2}) which is equivalent to add_test(NAME test1 COMMAND ... "a;b") add_test(NAME test2 COMMAND ... "c;d") Note that it is not possible to make ExternalData_Add_Test act exactly like add_test when quoted arguments contain semicolons because the CMake language flattens lists when constructing function ARGN values. This re-escape approach at least allows test arguments to have semicolons. While at it, teach ExternalData APIs to not transform "DATA{...;...}" arguments because the contained semicolons are non-sensical. Suggested-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com>
2013-03-12 23:40:37 +04:00
# Expand all arguments as a single string to preserve escaped semicolons.
ExternalData_expand_arguments("${target}" testArgs "${ARGN}")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
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add_test(${testArgs})
endfunction()
function(ExternalData_add_target target)
if(NOT ExternalData_URL_TEMPLATES)
message(FATAL_ERROR "ExternalData_URL_TEMPLATES is not set!")
endif()
if(NOT ExternalData_OBJECT_STORES)
set(ExternalData_OBJECT_STORES ${CMAKE_BINARY_DIR}/ExternalData/Objects)
endif()
set(config ${CMAKE_CURRENT_BINARY_DIR}/${target}_config.cmake)
configure_file(${_ExternalData_SELF_DIR}/ExternalData_config.cmake.in ${config} @ONLY)
set(files "")
# Set "_ExternalData_FILE_${file}" for each output file to avoid duplicate
# rules. Use local data first to prefer real files over content links.
# Custom commands to copy or link local data.
get_property(data_local GLOBAL PROPERTY _ExternalData_${target}_LOCAL)
foreach(entry IN LISTS data_local)
string(REPLACE "|" ";" tuple "${entry}")
list(GET tuple 0 file)
list(GET tuple 1 name)
if(NOT DEFINED "_ExternalData_FILE_${file}")
set("_ExternalData_FILE_${file}" 1)
add_custom_command(
COMMENT "Generating ${file}"
OUTPUT "${file}"
COMMAND ${CMAKE_COMMAND} -Drelative_top=${CMAKE_BINARY_DIR}
-Dfile=${file} -Dname=${name}
-DExternalData_ACTION=local
-DExternalData_CONFIG=${config}
-P ${_ExternalData_SELF}
ExternalData: Attach download rules to content links in IDEs Each data file to be created in the build tree corresponds one-to-one with a raw file or content link in the source tree. Use the MAIN_DEPENDENCY of add_custom_command to attach the build rule to the source tree file. This looks much nicer in the IDE project file browser and avoids ".rule" files.
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MAIN_DEPENDENCY "${name}"
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
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)
list(APPEND files "${file}")
endif()
endforeach()
# Custom commands to fetch remote data.
get_property(data_fetch GLOBAL PROPERTY _ExternalData_${target}_FETCH)
foreach(entry IN LISTS data_fetch)
string(REPLACE "|" ";" tuple "${entry}")
list(GET tuple 0 file)
list(GET tuple 1 name)
list(GET tuple 2 ext)
set(stamp "${ext}-stamp")
if(NOT DEFINED "_ExternalData_FILE_${file}")
set("_ExternalData_FILE_${file}" 1)
add_custom_command(
# Users care about the data file, so hide the hash/timestamp file.
COMMENT "Generating ${file}"
# The hash/timestamp file is the output from the build perspective.
# List the real file as a second output in case it is a broken link.
# The files must be listed in this order so CMake can hide from the
# make tool that a symlink target may not be newer than the input.
OUTPUT "${file}${stamp}" "${file}"
# Run the data fetch/update script.
COMMAND ${CMAKE_COMMAND} -Drelative_top=${CMAKE_BINARY_DIR}
-Dfile=${file} -Dname=${name} -Dext=${ext}
-DExternalData_ACTION=fetch
-DExternalData_CONFIG=${config}
-P ${_ExternalData_SELF}
# Update whenever the object hash changes.
ExternalData: Attach download rules to content links in IDEs Each data file to be created in the build tree corresponds one-to-one with a raw file or content link in the source tree. Use the MAIN_DEPENDENCY of add_custom_command to attach the build rule to the source tree file. This looks much nicer in the IDE project file browser and avoids ".rule" files.
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MAIN_DEPENDENCY "${name}${ext}"
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
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)
list(APPEND files "${file}${stamp}")
endif()
endforeach()
# Custom target to drive all update commands.
add_custom_target(${target} ALL DEPENDS ${files})
endfunction()
function(ExternalData_expand_arguments target outArgsVar)
# Replace DATA{} references with real arguments.
ExternalData: Preserve escaped semicolons during argument expansion The CMake language implicitly flattens lists so a ";" in a list element must be escaped with a backslash. List expansion removes backslashes escaping semicolons to leave raw semicolons in the values. Teach ExternalData_Add_Test and ExternalData_Expand_Arguments to re-escape semicolons found in list elements so the resulting argument lists work as if constructed directly by the set() command. For example: ExternalData_Add_Test(Data NAME test1 COMMAND ... "a\\;b") ExternalData_Expand_Arguments(Data args2 "c\\;d") add_test(NAME test2 COMMAND ... ${args2}) should be equivalent to set(args1 "a\\;b") add_test(NAME test1 COMMAND ... ${args1}) set(args2 "c\\;d") add_test(NAME test2 COMMAND ... ${args2}) which is equivalent to add_test(NAME test1 COMMAND ... "a;b") add_test(NAME test2 COMMAND ... "c;d") Note that it is not possible to make ExternalData_Add_Test act exactly like add_test when quoted arguments contain semicolons because the CMake language flattens lists when constructing function ARGN values. This re-escape approach at least allows test arguments to have semicolons. While at it, teach ExternalData APIs to not transform "DATA{...;...}" arguments because the contained semicolons are non-sensical. Suggested-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com>
2013-03-12 23:40:37 +04:00
set(data_regex "DATA{([^;{}\r\n]*)}")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
set(other_regex "([^D]|D[^A]|DA[^T]|DAT[^A]|DATA[^{])+|.")
set(outArgs "")
ExternalData: Preserve escaped semicolons during argument expansion The CMake language implicitly flattens lists so a ";" in a list element must be escaped with a backslash. List expansion removes backslashes escaping semicolons to leave raw semicolons in the values. Teach ExternalData_Add_Test and ExternalData_Expand_Arguments to re-escape semicolons found in list elements so the resulting argument lists work as if constructed directly by the set() command. For example: ExternalData_Add_Test(Data NAME test1 COMMAND ... "a\\;b") ExternalData_Expand_Arguments(Data args2 "c\\;d") add_test(NAME test2 COMMAND ... ${args2}) should be equivalent to set(args1 "a\\;b") add_test(NAME test1 COMMAND ... ${args1}) set(args2 "c\\;d") add_test(NAME test2 COMMAND ... ${args2}) which is equivalent to add_test(NAME test1 COMMAND ... "a;b") add_test(NAME test2 COMMAND ... "c;d") Note that it is not possible to make ExternalData_Add_Test act exactly like add_test when quoted arguments contain semicolons because the CMake language flattens lists when constructing function ARGN values. This re-escape approach at least allows test arguments to have semicolons. While at it, teach ExternalData APIs to not transform "DATA{...;...}" arguments because the contained semicolons are non-sensical. Suggested-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com>
2013-03-12 23:40:37 +04:00
# This list expansion un-escapes semicolons in list element values so we
# must re-escape them below anywhere a new list expansion will occur.
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
foreach(arg IN LISTS ARGN)
if("x${arg}" MATCHES "${data_regex}")
ExternalData: Preserve escaped semicolons during argument expansion The CMake language implicitly flattens lists so a ";" in a list element must be escaped with a backslash. List expansion removes backslashes escaping semicolons to leave raw semicolons in the values. Teach ExternalData_Add_Test and ExternalData_Expand_Arguments to re-escape semicolons found in list elements so the resulting argument lists work as if constructed directly by the set() command. For example: ExternalData_Add_Test(Data NAME test1 COMMAND ... "a\\;b") ExternalData_Expand_Arguments(Data args2 "c\\;d") add_test(NAME test2 COMMAND ... ${args2}) should be equivalent to set(args1 "a\\;b") add_test(NAME test1 COMMAND ... ${args1}) set(args2 "c\\;d") add_test(NAME test2 COMMAND ... ${args2}) which is equivalent to add_test(NAME test1 COMMAND ... "a;b") add_test(NAME test2 COMMAND ... "c;d") Note that it is not possible to make ExternalData_Add_Test act exactly like add_test when quoted arguments contain semicolons because the CMake language flattens lists when constructing function ARGN values. This re-escape approach at least allows test arguments to have semicolons. While at it, teach ExternalData APIs to not transform "DATA{...;...}" arguments because the contained semicolons are non-sensical. Suggested-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com>
2013-03-12 23:40:37 +04:00
# Re-escape in-value semicolons before expansion in foreach below.
string(REPLACE ";" "\\;" tmp "${arg}")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
# Split argument into DATA{}-pieces and other pieces.
ExternalData: Preserve escaped semicolons during argument expansion The CMake language implicitly flattens lists so a ";" in a list element must be escaped with a backslash. List expansion removes backslashes escaping semicolons to leave raw semicolons in the values. Teach ExternalData_Add_Test and ExternalData_Expand_Arguments to re-escape semicolons found in list elements so the resulting argument lists work as if constructed directly by the set() command. For example: ExternalData_Add_Test(Data NAME test1 COMMAND ... "a\\;b") ExternalData_Expand_Arguments(Data args2 "c\\;d") add_test(NAME test2 COMMAND ... ${args2}) should be equivalent to set(args1 "a\\;b") add_test(NAME test1 COMMAND ... ${args1}) set(args2 "c\\;d") add_test(NAME test2 COMMAND ... ${args2}) which is equivalent to add_test(NAME test1 COMMAND ... "a;b") add_test(NAME test2 COMMAND ... "c;d") Note that it is not possible to make ExternalData_Add_Test act exactly like add_test when quoted arguments contain semicolons because the CMake language flattens lists when constructing function ARGN values. This re-escape approach at least allows test arguments to have semicolons. While at it, teach ExternalData APIs to not transform "DATA{...;...}" arguments because the contained semicolons are non-sensical. Suggested-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com>
2013-03-12 23:40:37 +04:00
string(REGEX MATCHALL "${data_regex}|${other_regex}" pieces "${tmp}")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
# Compose output argument with DATA{}-pieces replaced.
set(outArg "")
foreach(piece IN LISTS pieces)
if("x${piece}" MATCHES "^x${data_regex}$")
# Replace this DATA{}-piece with a file path.
string(REGEX REPLACE "${data_regex}" "\\1" data "${piece}")
_ExternalData_arg("${target}" "${piece}" "${data}" file)
set(outArg "${outArg}${file}")
else()
# No replacement needed for this piece.
set(outArg "${outArg}${piece}")
endif()
endforeach()
else()
# No replacements needed in this argument.
ExternalData: Preserve escaped semicolons during argument expansion The CMake language implicitly flattens lists so a ";" in a list element must be escaped with a backslash. List expansion removes backslashes escaping semicolons to leave raw semicolons in the values. Teach ExternalData_Add_Test and ExternalData_Expand_Arguments to re-escape semicolons found in list elements so the resulting argument lists work as if constructed directly by the set() command. For example: ExternalData_Add_Test(Data NAME test1 COMMAND ... "a\\;b") ExternalData_Expand_Arguments(Data args2 "c\\;d") add_test(NAME test2 COMMAND ... ${args2}) should be equivalent to set(args1 "a\\;b") add_test(NAME test1 COMMAND ... ${args1}) set(args2 "c\\;d") add_test(NAME test2 COMMAND ... ${args2}) which is equivalent to add_test(NAME test1 COMMAND ... "a;b") add_test(NAME test2 COMMAND ... "c;d") Note that it is not possible to make ExternalData_Add_Test act exactly like add_test when quoted arguments contain semicolons because the CMake language flattens lists when constructing function ARGN values. This re-escape approach at least allows test arguments to have semicolons. While at it, teach ExternalData APIs to not transform "DATA{...;...}" arguments because the contained semicolons are non-sensical. Suggested-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com>
2013-03-12 23:40:37 +04:00
set(outArg "${arg}")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
endif()
ExternalData: Preserve escaped semicolons during argument expansion The CMake language implicitly flattens lists so a ";" in a list element must be escaped with a backslash. List expansion removes backslashes escaping semicolons to leave raw semicolons in the values. Teach ExternalData_Add_Test and ExternalData_Expand_Arguments to re-escape semicolons found in list elements so the resulting argument lists work as if constructed directly by the set() command. For example: ExternalData_Add_Test(Data NAME test1 COMMAND ... "a\\;b") ExternalData_Expand_Arguments(Data args2 "c\\;d") add_test(NAME test2 COMMAND ... ${args2}) should be equivalent to set(args1 "a\\;b") add_test(NAME test1 COMMAND ... ${args1}) set(args2 "c\\;d") add_test(NAME test2 COMMAND ... ${args2}) which is equivalent to add_test(NAME test1 COMMAND ... "a;b") add_test(NAME test2 COMMAND ... "c;d") Note that it is not possible to make ExternalData_Add_Test act exactly like add_test when quoted arguments contain semicolons because the CMake language flattens lists when constructing function ARGN values. This re-escape approach at least allows test arguments to have semicolons. While at it, teach ExternalData APIs to not transform "DATA{...;...}" arguments because the contained semicolons are non-sensical. Suggested-by: Jean-Christophe Fillion-Robin <jchris.fillionr@kitware.com>
2013-03-12 23:40:37 +04:00
# Re-escape in-value semicolons in resulting list.
string(REPLACE ";" "\\;" outArg "${outArg}")
list(APPEND outArgs "${outArg}")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
endforeach()
set("${outArgsVar}" "${outArgs}" PARENT_SCOPE)
endfunction()
#-----------------------------------------------------------------------------
# Private helper interface
ExternalData: Add support for SHA 1 and 2 hash algorithms Update the Module.ExternalData and RunCMake.ExternalData tests to cover some of them.
2013-01-24 23:12:10 +04:00
set(_ExternalData_REGEX_ALGO "MD5|SHA1|SHA224|SHA256|SHA384|SHA512")
set(_ExternalData_REGEX_EXT "md5|sha1|sha224|sha256|sha384|sha512")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
set(_ExternalData_SELF "${CMAKE_CURRENT_LIST_FILE}")
get_filename_component(_ExternalData_SELF_DIR "${_ExternalData_SELF}" PATH)
function(_ExternalData_compute_hash var_hash algo file)
ExternalData: Generalize hash algo/ext handling Use private global variables _ExternalData_REGEX_(ALGO|EXT) to match the possible hash algorithm names and extensions in regular expressions. Use "file(<algo>)" instead of "cmake -E md5sum" to compute hashes without a child process and to support more hash algorithms.
2013-01-24 23:09:39 +04:00
if("${algo}" MATCHES "^${_ExternalData_REGEX_ALGO}$")
file("${algo}" "${file}" hash)
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
set("${var_hash}" "${hash}" PARENT_SCOPE)
else()
message(FATAL_ERROR "Hash algorithm ${algo} unimplemented.")
endif()
endfunction()
function(_ExternalData_random var)
ExternalData: Remove compatibility with CMake < 2.8.5 Now that the module comes in a sufficiently new CMake it does not need to support older versions.
2013-01-24 22:34:12 +04:00
string(RANDOM LENGTH 6 random)
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
set("${var}" "${random}" PARENT_SCOPE)
endfunction()
function(_ExternalData_exact_regex regex_var string)
string(REGEX REPLACE "([][+.*()^])" "\\\\\\1" regex "${string}")
set("${regex_var}" "${regex}" PARENT_SCOPE)
endfunction()
function(_ExternalData_atomic_write file content)
_ExternalData_random(random)
set(tmp "${file}.tmp${random}")
file(WRITE "${tmp}" "${content}")
file(RENAME "${tmp}" "${file}")
endfunction()
function(_ExternalData_link_content name var_ext)
ExternalData: Generalize hash algo/ext handling Use private global variables _ExternalData_REGEX_(ALGO|EXT) to match the possible hash algorithm names and extensions in regular expressions. Use "file(<algo>)" instead of "cmake -E md5sum" to compute hashes without a child process and to support more hash algorithms.
2013-01-24 23:09:39 +04:00
if("${ExternalData_LINK_CONTENT}" MATCHES "^(${_ExternalData_REGEX_ALGO})$")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
set(algo "${ExternalData_LINK_CONTENT}")
else()
message(FATAL_ERROR
"Unknown hash algorithm specified by ExternalData_LINK_CONTENT:\n"
" ${ExternalData_LINK_CONTENT}")
endif()
_ExternalData_compute_hash(hash "${algo}" "${name}")
get_filename_component(dir "${name}" PATH)
set(staged "${dir}/.ExternalData_${algo}_${hash}")
ExternalData: Generalize hash algo/ext handling Use private global variables _ExternalData_REGEX_(ALGO|EXT) to match the possible hash algorithm names and extensions in regular expressions. Use "file(<algo>)" instead of "cmake -E md5sum" to compute hashes without a child process and to support more hash algorithms.
2013-01-24 23:09:39 +04:00
string(TOLOWER ".${algo}" ext)
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
_ExternalData_atomic_write("${name}${ext}" "${hash}\n")
file(RENAME "${name}" "${staged}")
set("${var_ext}" "${ext}" PARENT_SCOPE)
file(RELATIVE_PATH relname "${ExternalData_SOURCE_ROOT}" "${name}${ext}")
message(STATUS "Linked ${relname} to ExternalData ${algo}/${hash}")
endfunction()
function(_ExternalData_arg target arg options var_file)
# Separate data path from the options.
string(REPLACE "," ";" options "${options}")
list(GET options 0 data)
list(REMOVE_AT options 0)
ExternalData: Allow DATA{} syntax to reference directories Use a trailing slash to reference a directory. Require that a list of associated files be specified to select from within the directory. One may simply use DATA{Dir/,REGEX:.*} to reference all files but get a directory passed on the command line.
2013-01-30 00:12:08 +04:00
# Interpret trailing slashes as directories.
set(data_is_directory 0)
if("x${data}" MATCHES "^x(.*)([/\\])$")
set(data_is_directory 1)
set(data "${CMAKE_MATCH_1}")
ExternalData: Do not match directory names when resolving DATA{} Our content link and object download infrastructure supports only blobs (files), not trees (directories). Do not allow references to end in a slash.
2013-01-24 22:35:30 +04:00
endif()
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
# Convert to full path.
if(IS_ABSOLUTE "${data}")
set(absdata "${data}")
else()
ExternalData: Collapse ../ components in DATA{} paths Relative path components need to be normalized out even if they appear in the middle of a caller-supplied string.
2013-01-30 23:44:49 +04:00
set(absdata "${CMAKE_CURRENT_SOURCE_DIR}/${data}")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
endif()
ExternalData: Collapse ../ components in DATA{} paths Relative path components need to be normalized out even if they appear in the middle of a caller-supplied string.
2013-01-30 23:44:49 +04:00
get_filename_component(absdata "${absdata}" ABSOLUTE)
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
# Convert to relative path under the source tree.
if(NOT ExternalData_SOURCE_ROOT)
set(ExternalData_SOURCE_ROOT "${CMAKE_SOURCE_DIR}")
endif()
set(top_src "${ExternalData_SOURCE_ROOT}")
file(RELATIVE_PATH reldata "${top_src}" "${absdata}")
if(IS_ABSOLUTE "${reldata}" OR "${reldata}" MATCHES "^\\.\\./")
message(FATAL_ERROR "Data file referenced by argument\n"
" ${arg}\n"
"does not lie under the top-level source directory\n"
" ${top_src}\n")
endif()
ExternalData: Allow DATA{} syntax to reference directories Use a trailing slash to reference a directory. Require that a list of associated files be specified to select from within the directory. One may simply use DATA{Dir/,REGEX:.*} to reference all files but get a directory passed on the command line.
2013-01-30 00:12:08 +04:00
if(data_is_directory AND NOT IS_DIRECTORY "${top_src}/${reldata}")
message(FATAL_ERROR "Data directory referenced by argument\n"
" ${arg}\n"
"corresponds to source tree path\n"
" ${reldata}\n"
"that does not exist as a directory!")
endif()
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
if(NOT ExternalData_BINARY_ROOT)
set(ExternalData_BINARY_ROOT "${CMAKE_BINARY_DIR}")
endif()
set(top_bin "${ExternalData_BINARY_ROOT}")
# Handle in-source builds gracefully.
if("${top_src}" STREQUAL "${top_bin}")
if(ExternalData_LINK_CONTENT)
message(WARNING "ExternalData_LINK_CONTENT cannot be used in-source")
set(ExternalData_LINK_CONTENT 0)
endif()
set(top_same 1)
endif()
set(external "") # Entries external to the source tree.
set(internal "") # Entries internal to the source tree.
ExternalData: Allow DATA{} syntax to reference directories Use a trailing slash to reference a directory. Require that a list of associated files be specified to select from within the directory. One may simply use DATA{Dir/,REGEX:.*} to reference all files but get a directory passed on the command line.
2013-01-30 00:12:08 +04:00
set(have_original ${data_is_directory})
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
# Process options.
ExternalData: Improve series matching using an explicit syntax Automatic series recognition can generate false positives too easily when the default series configuration is flexible enough to handle common cases. Avoid false positives by requiring an explicit syntax to activate series recognition. Choose the syntax DATA{<name>,:} to be short, simple, and look like a vertical ellipsis. This allows us to improve the default series match configuration. Allow series references to contain one of the numbered file names. Allow '-' as a separator in addition to '.' and '_'. Document what the default configuration matches. Also provide more options to configure series <name> parsing.
2013-01-26 01:30:30 +04:00
set(series_option "")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
set(associated_files "")
set(associated_regex "")
foreach(opt ${options})
if("x${opt}" MATCHES "^xREGEX:[^:/]+$")
# Regular expression to match associated files.
string(REGEX REPLACE "^REGEX:" "" regex "${opt}")
list(APPEND associated_regex "${regex}")
replace string(... MATCHES "^const$) with string(... STREQUAL "const")
2013-06-02 23:42:10 +04:00
elseif(opt STREQUAL ":")
ExternalData: Improve series matching using an explicit syntax Automatic series recognition can generate false positives too easily when the default series configuration is flexible enough to handle common cases. Avoid false positives by requiring an explicit syntax to activate series recognition. Choose the syntax DATA{<name>,:} to be short, simple, and look like a vertical ellipsis. This allows us to improve the default series match configuration. Allow series references to contain one of the numbered file names. Allow '-' as a separator in addition to '.' and '_'. Document what the default configuration matches. Also provide more options to configure series <name> parsing.
2013-01-26 01:30:30 +04:00
# Activate series matching.
set(series_option "${opt}")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
elseif("x${opt}" MATCHES "^[^][:/*?]+$")
# Specific associated file.
list(APPEND associated_files "${opt}")
else()
message(FATAL_ERROR "Unknown option \"${opt}\" in argument\n"
" ${arg}\n")
endif()
endforeach()
ExternalData: Improve series matching using an explicit syntax Automatic series recognition can generate false positives too easily when the default series configuration is flexible enough to handle common cases. Avoid false positives by requiring an explicit syntax to activate series recognition. Choose the syntax DATA{<name>,:} to be short, simple, and look like a vertical ellipsis. This allows us to improve the default series match configuration. Allow series references to contain one of the numbered file names. Allow '-' as a separator in addition to '.' and '_'. Document what the default configuration matches. Also provide more options to configure series <name> parsing.
2013-01-26 01:30:30 +04:00
if(series_option)
ExternalData: Allow DATA{} syntax to reference directories Use a trailing slash to reference a directory. Require that a list of associated files be specified to select from within the directory. One may simply use DATA{Dir/,REGEX:.*} to reference all files but get a directory passed on the command line.
2013-01-30 00:12:08 +04:00
if(data_is_directory)
message(FATAL_ERROR "Series option \"${series_option}\" not allowed with directories.")
endif()
ExternalData: Improve series matching using an explicit syntax Automatic series recognition can generate false positives too easily when the default series configuration is flexible enough to handle common cases. Avoid false positives by requiring an explicit syntax to activate series recognition. Choose the syntax DATA{<name>,:} to be short, simple, and look like a vertical ellipsis. This allows us to improve the default series match configuration. Allow series references to contain one of the numbered file names. Allow '-' as a separator in addition to '.' and '_'. Document what the default configuration matches. Also provide more options to configure series <name> parsing.
2013-01-26 01:30:30 +04:00
if(associated_files OR associated_regex)
message(FATAL_ERROR "Series option \"${series_option}\" not allowed with associated files.")
endif()
# Load a whole file series.
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
_ExternalData_arg_series()
ExternalData: Allow DATA{} syntax to reference directories Use a trailing slash to reference a directory. Require that a list of associated files be specified to select from within the directory. One may simply use DATA{Dir/,REGEX:.*} to reference all files but get a directory passed on the command line.
2013-01-30 00:12:08 +04:00
elseif(data_is_directory)
if(associated_files OR associated_regex)
# Load listed/matching associated files in the directory.
_ExternalData_arg_associated()
else()
message(FATAL_ERROR "Data directory referenced by argument\n"
" ${arg}\n"
"must list associated files.")
endif()
ExternalData: Improve series matching using an explicit syntax Automatic series recognition can generate false positives too easily when the default series configuration is flexible enough to handle common cases. Avoid false positives by requiring an explicit syntax to activate series recognition. Choose the syntax DATA{<name>,:} to be short, simple, and look like a vertical ellipsis. This allows us to improve the default series match configuration. Allow series references to contain one of the numbered file names. Allow '-' as a separator in addition to '.' and '_'. Document what the default configuration matches. Also provide more options to configure series <name> parsing.
2013-01-26 01:30:30 +04:00
else()
# Load the named data file.
_ExternalData_arg_single()
if(associated_files OR associated_regex)
# Load listed/matching associated files.
_ExternalData_arg_associated()
endif()
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
endif()
if(NOT have_original)
message(FATAL_ERROR "Data file referenced by argument\n"
" ${arg}\n"
"corresponds to source tree path\n"
" ${reldata}\n"
ExternalData: Do not match directory names when resolving DATA{} Our content link and object download infrastructure supports only blobs (files), not trees (directories). Do not allow references to end in a slash.
2013-01-24 22:35:30 +04:00
"that does not exist as a file (with or without an extension)!")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
endif()
if(external)
# Make the series available in the build tree.
set_property(GLOBAL APPEND PROPERTY
_ExternalData_${target}_FETCH "${external}")
set_property(GLOBAL APPEND PROPERTY
_ExternalData_${target}_LOCAL "${internal}")
set("${var_file}" "${top_bin}/${reldata}" PARENT_SCOPE)
else()
# The whole series is in the source tree.
set("${var_file}" "${top_src}/${reldata}" PARENT_SCOPE)
endif()
endfunction()
macro(_ExternalData_arg_associated)
# Associated files lie in the same directory.
ExternalData: Allow DATA{} syntax to reference directories Use a trailing slash to reference a directory. Require that a list of associated files be specified to select from within the directory. One may simply use DATA{Dir/,REGEX:.*} to reference all files but get a directory passed on the command line.
2013-01-30 00:12:08 +04:00
if(data_is_directory)
set(reldir "${reldata}")
else()
get_filename_component(reldir "${reldata}" PATH)
endif()
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
if(reldir)
set(reldir "${reldir}/")
endif()
_ExternalData_exact_regex(reldir_regex "${reldir}")
# Find files named explicitly.
foreach(file ${associated_files})
_ExternalData_exact_regex(file_regex "${file}")
_ExternalData_arg_find_files("${reldir}${file}" "${reldir_regex}${file_regex}")
endforeach()
# Find files matching the given regular expressions.
set(all "")
set(sep "")
foreach(regex ${associated_regex})
set(all "${all}${sep}${reldir_regex}${regex}")
set(sep "|")
endforeach()
_ExternalData_arg_find_files("${reldir}" "${all}")
endmacro()
macro(_ExternalData_arg_single)
# Match only the named data by itself.
_ExternalData_exact_regex(data_regex "${reldata}")
_ExternalData_arg_find_files("${reldata}" "${data_regex}")
endmacro()
macro(_ExternalData_arg_series)
# Configure series parsing and matching.
ExternalData: Improve series matching using an explicit syntax Automatic series recognition can generate false positives too easily when the default series configuration is flexible enough to handle common cases. Avoid false positives by requiring an explicit syntax to activate series recognition. Choose the syntax DATA{<name>,:} to be short, simple, and look like a vertical ellipsis. This allows us to improve the default series match configuration. Allow series references to contain one of the numbered file names. Allow '-' as a separator in addition to '.' and '_'. Document what the default configuration matches. Also provide more options to configure series <name> parsing.
2013-01-26 01:30:30 +04:00
set(series_parse_prefix "")
set(series_parse_number "\\1")
set(series_parse_suffix "\\2")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
if(ExternalData_SERIES_PARSE)
ExternalData: Improve series matching using an explicit syntax Automatic series recognition can generate false positives too easily when the default series configuration is flexible enough to handle common cases. Avoid false positives by requiring an explicit syntax to activate series recognition. Choose the syntax DATA{<name>,:} to be short, simple, and look like a vertical ellipsis. This allows us to improve the default series match configuration. Allow series references to contain one of the numbered file names. Allow '-' as a separator in addition to '.' and '_'. Document what the default configuration matches. Also provide more options to configure series <name> parsing.
2013-01-26 01:30:30 +04:00
if(ExternalData_SERIES_PARSE_NUMBER AND ExternalData_SERIES_PARSE_SUFFIX)
if(ExternalData_SERIES_PARSE_PREFIX)
set(series_parse_prefix "\\${ExternalData_SERIES_PARSE_PREFIX}")
endif()
set(series_parse_number "\\${ExternalData_SERIES_PARSE_NUMBER}")
set(series_parse_suffix "\\${ExternalData_SERIES_PARSE_SUFFIX}")
elseif(NOT "x${ExternalData_SERIES_PARSE}" MATCHES "^x\\([^()]*\\)\\([^()]*\\)\\$$")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
message(FATAL_ERROR
"ExternalData_SERIES_PARSE is set to\n"
" ${ExternalData_SERIES_PARSE}\n"
"which is not of the form\n"
ExternalData: Improve series matching using an explicit syntax Automatic series recognition can generate false positives too easily when the default series configuration is flexible enough to handle common cases. Avoid false positives by requiring an explicit syntax to activate series recognition. Choose the syntax DATA{<name>,:} to be short, simple, and look like a vertical ellipsis. This allows us to improve the default series match configuration. Allow series references to contain one of the numbered file names. Allow '-' as a separator in addition to '.' and '_'. Document what the default configuration matches. Also provide more options to configure series <name> parsing.
2013-01-26 01:30:30 +04:00
" (<number>)(<suffix>)$\n"
"Fix the regular expression or set variables\n"
" ExternalData_SERIES_PARSE_PREFIX = <prefix> regex group number, if any\n"
" ExternalData_SERIES_PARSE_NUMBER = <number> regex group number\n"
" ExternalData_SERIES_PARSE_SUFFIX = <suffix> regex group number\n"
)
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
endif()
set(series_parse "${ExternalData_SERIES_PARSE}")
else()
ExternalData: Improve series matching using an explicit syntax Automatic series recognition can generate false positives too easily when the default series configuration is flexible enough to handle common cases. Avoid false positives by requiring an explicit syntax to activate series recognition. Choose the syntax DATA{<name>,:} to be short, simple, and look like a vertical ellipsis. This allows us to improve the default series match configuration. Allow series references to contain one of the numbered file names. Allow '-' as a separator in addition to '.' and '_'. Document what the default configuration matches. Also provide more options to configure series <name> parsing.
2013-01-26 01:30:30 +04:00
set(series_parse "([0-9]*)(\\.[^./]*)$")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
endif()
if(ExternalData_SERIES_MATCH)
set(series_match "${ExternalData_SERIES_MATCH}")
else()
ExternalData: Improve series matching using an explicit syntax Automatic series recognition can generate false positives too easily when the default series configuration is flexible enough to handle common cases. Avoid false positives by requiring an explicit syntax to activate series recognition. Choose the syntax DATA{<name>,:} to be short, simple, and look like a vertical ellipsis. This allows us to improve the default series match configuration. Allow series references to contain one of the numbered file names. Allow '-' as a separator in addition to '.' and '_'. Document what the default configuration matches. Also provide more options to configure series <name> parsing.
2013-01-26 01:30:30 +04:00
set(series_match "[_.-]?[0-9]*")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
endif()
# Parse the base, number, and extension components of the series.
ExternalData: Improve series matching using an explicit syntax Automatic series recognition can generate false positives too easily when the default series configuration is flexible enough to handle common cases. Avoid false positives by requiring an explicit syntax to activate series recognition. Choose the syntax DATA{<name>,:} to be short, simple, and look like a vertical ellipsis. This allows us to improve the default series match configuration. Allow series references to contain one of the numbered file names. Allow '-' as a separator in addition to '.' and '_'. Document what the default configuration matches. Also provide more options to configure series <name> parsing.
2013-01-26 01:30:30 +04:00
string(REGEX REPLACE "${series_parse}" "${series_parse_prefix};${series_parse_number};${series_parse_suffix}" tuple "${reldata}")
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
list(LENGTH tuple len)
if(NOT "${len}" EQUAL 3)
message(FATAL_ERROR "Data file referenced by argument\n"
" ${arg}\n"
"corresponds to path\n"
" ${reldata}\n"
"that does not match regular expression\n"
" ${series_parse}")
endif()
list(GET tuple 0 relbase)
list(GET tuple 2 ext)
# Glob files that might match the series.
ExternalData: Cleanup stray TODO and typo in comments Remove an outdated TODO line left from earlier designs. Also fix a typo.
2013-01-24 22:37:54 +04:00
# Then match base, number, and extension.
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
_ExternalData_exact_regex(series_base "${relbase}")
_ExternalData_exact_regex(series_ext "${ext}")
_ExternalData_arg_find_files("${relbase}*${ext}"
"${series_base}${series_match}${series_ext}")
endmacro()
function(_ExternalData_arg_find_files pattern regex)
file(GLOB globbed RELATIVE "${top_src}" "${top_src}/${pattern}*")
foreach(entry IN LISTS globbed)
ExternalData: Generalize hash algo/ext handling Use private global variables _ExternalData_REGEX_(ALGO|EXT) to match the possible hash algorithm names and extensions in regular expressions. Use "file(<algo>)" instead of "cmake -E md5sum" to compute hashes without a child process and to support more hash algorithms.
2013-01-24 23:09:39 +04:00
if("x${entry}" MATCHES "^x(.*)(\\.(${_ExternalData_REGEX_EXT}))$")
ExternalData: Allow ()-groups in series match regex Refactor use of the ExternalData_SERIES_MATCH value to avoid assuming that it has no ()-groups that interfere with group indexing. Extend the Module.ExternalData test to cover this case.
2013-01-29 19:26:11 +04:00
set(relname "${CMAKE_MATCH_1}")
set(alg "${CMAKE_MATCH_2}")
else()
set(relname "${entry}")
set(alg "")
endif()
ExternalData: Do not re-stage staged object files The ExternalData_LINK_CONTENT option tells ExternalData to convert real data files it finds into content links and to "stage" the original content in a ".ExternalData_<algo>_<hash>" file. However, after a data object has been staged it is possible that a user-provided pattern in the "REGEX:" option will later match the staged object file. We must not process staged object files even when a user pattern matches them. Fix the implementation to not match a staged object file as a normal data file for conversion. Extend the RunCMake.ExternalData test to cover this case.
2013-05-24 23:33:38 +04:00
if("x${relname}" MATCHES "^x${regex}$" # matches
AND NOT IS_DIRECTORY "${top_src}/${entry}" # not a directory
AND NOT "x${relname}" MATCHES "(^x|/)\\.ExternalData_" # not staged obj
)
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
set(name "${top_src}/${relname}")
set(file "${top_bin}/${relname}")
if(alg)
list(APPEND external "${file}|${name}|${alg}")
elseif(ExternalData_LINK_CONTENT)
_ExternalData_link_content("${name}" alg)
list(APPEND external "${file}|${name}|${alg}")
elseif(NOT top_same)
list(APPEND internal "${file}|${name}")
endif()
if("${relname}" STREQUAL "${reldata}")
set(have_original 1)
endif()
endif()
endforeach()
set(external "${external}" PARENT_SCOPE)
set(internal "${internal}" PARENT_SCOPE)
set(have_original "${have_original}" PARENT_SCOPE)
endfunction()
#-----------------------------------------------------------------------------
# Private script mode interface
if(CMAKE_GENERATOR OR NOT ExternalData_ACTION)
return()
endif()
if(ExternalData_CONFIG)
include(${ExternalData_CONFIG})
endif()
if(NOT ExternalData_URL_TEMPLATES)
message(FATAL_ERROR "No ExternalData_URL_TEMPLATES set!")
endif()
function(_ExternalData_link_or_copy src dst)
# Create a temporary file first.
get_filename_component(dst_dir "${dst}" PATH)
file(MAKE_DIRECTORY "${dst_dir}")
_ExternalData_random(random)
set(tmp "${dst}.tmp${random}")
if(UNIX)
# Create a symbolic link.
set(tgt "${src}")
if(relative_top)
# Use relative path if files are close enough.
file(RELATIVE_PATH relsrc "${relative_top}" "${src}")
file(RELATIVE_PATH relfile "${relative_top}" "${dst}")
if(NOT IS_ABSOLUTE "${relsrc}" AND NOT "${relsrc}" MATCHES "^\\.\\./" AND
NOT IS_ABSOLUTE "${reldst}" AND NOT "${reldst}" MATCHES "^\\.\\./")
file(RELATIVE_PATH tgt "${dst_dir}" "${src}")
endif()
endif()
execute_process(COMMAND "${CMAKE_COMMAND}" -E create_symlink "${tgt}" "${tmp}" RESULT_VARIABLE result)
else()
# Create a copy.
execute_process(COMMAND "${CMAKE_COMMAND}" -E copy "${src}" "${tmp}" RESULT_VARIABLE result)
endif()
if(result)
file(REMOVE "${tmp}")
message(FATAL_ERROR "Failed to create\n ${tmp}\nfrom\n ${obj}")
endif()
# Atomically create/replace the real destination.
file(RENAME "${tmp}" "${dst}")
endfunction()
function(_ExternalData_download_file url file err_var msg_var)
set(retry 3)
while(retry)
math(EXPR retry "${retry} - 1")
ExternalData: Remove compatibility with CMake < 2.8.5 Now that the module comes in a sufficiently new CMake it does not need to support older versions.
2013-01-24 22:34:12 +04:00
if(ExternalData_TIMEOUT_INACTIVITY)
set(inactivity_timeout INACTIVITY_TIMEOUT ${ExternalData_TIMEOUT_INACTIVITY})
elseif(NOT "${ExternalData_TIMEOUT_INACTIVITY}" EQUAL 0)
set(inactivity_timeout INACTIVITY_TIMEOUT 60)
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
else()
set(inactivity_timeout "")
endif()
if(ExternalData_TIMEOUT_ABSOLUTE)
set(absolute_timeout TIMEOUT ${ExternalData_TIMEOUT_ABSOLUTE})
elseif(NOT "${ExternalData_TIMEOUT_ABSOLUTE}" EQUAL 0)
set(absolute_timeout TIMEOUT 300)
else()
set(absolute_timeout "")
endif()
file(DOWNLOAD "${url}" "${file}" STATUS status LOG log ${inactivity_timeout} ${absolute_timeout} SHOW_PROGRESS)
list(GET status 0 err)
list(GET status 1 msg)
if(err)
if("${msg}" MATCHES "HTTP response code said error" AND
"${log}" MATCHES "error: 503")
set(msg "temporarily unavailable")
endif()
elseif("${log}" MATCHES "\nHTTP[^\n]* 503")
set(err TRUE)
set(msg "temporarily unavailable")
endif()
if(NOT err OR NOT "${msg}" MATCHES "partial|timeout|temporarily")
break()
elseif(retry)
message(STATUS "[download terminated: ${msg}, retries left: ${retry}]")
endif()
endwhile()
set("${err_var}" "${err}" PARENT_SCOPE)
set("${msg_var}" "${msg}" PARENT_SCOPE)
endfunction()
function(_ExternalData_download_object name hash algo var_obj)
# Search all object stores for an existing object.
foreach(dir ${ExternalData_OBJECT_STORES})
set(obj "${dir}/${algo}/${hash}")
if(EXISTS "${obj}")
message(STATUS "Found object: \"${obj}\"")
set("${var_obj}" "${obj}" PARENT_SCOPE)
return()
endif()
endforeach()
# Download object to the first store.
list(GET ExternalData_OBJECT_STORES 0 store)
set(obj "${store}/${algo}/${hash}")
_ExternalData_random(random)
set(tmp "${obj}.tmp${random}")
set(found 0)
set(tried "")
foreach(url_template IN LISTS ExternalData_URL_TEMPLATES)
string(REPLACE "%(hash)" "${hash}" url_tmp "${url_template}")
string(REPLACE "%(algo)" "${algo}" url "${url_tmp}")
message(STATUS "Fetching \"${url}\"")
_ExternalData_download_file("${url}" "${tmp}" err errMsg)
set(tried "${tried}\n ${url}")
if(err)
set(tried "${tried} (${errMsg})")
else()
# Verify downloaded object.
_ExternalData_compute_hash(dl_hash "${algo}" "${tmp}")
if("${dl_hash}" STREQUAL "${hash}")
set(found 1)
break()
else()
set(tried "${tried} (wrong hash ${algo}=${dl_hash})")
if("$ENV{ExternalData_DEBUG_DOWNLOAD}" MATCHES ".")
file(RENAME "${tmp}" "${store}/${algo}/${dl_hash}")
endif()
endif()
endif()
file(REMOVE "${tmp}")
endforeach()
get_filename_component(dir "${name}" PATH)
set(staged "${dir}/.ExternalData_${algo}_${hash}")
if(found)
file(RENAME "${tmp}" "${obj}")
message(STATUS "Downloaded object: \"${obj}\"")
elseif(EXISTS "${staged}")
set(obj "${staged}")
message(STATUS "Staged object: \"${obj}\"")
else()
message(FATAL_ERROR "Object ${algo}=${hash} not found at:${tried}")
endif()
set("${var_obj}" "${obj}" PARENT_SCOPE)
endfunction()
if("${ExternalData_ACTION}" STREQUAL "fetch")
foreach(v ExternalData_OBJECT_STORES file name ext)
if(NOT DEFINED "${v}")
message(FATAL_ERROR "No \"-D${v}=\" value provided!")
endif()
endforeach()
file(READ "${name}${ext}" hash)
string(STRIP "${hash}" hash)
ExternalData: Generalize hash algo/ext handling Use private global variables _ExternalData_REGEX_(ALGO|EXT) to match the possible hash algorithm names and extensions in regular expressions. Use "file(<algo>)" instead of "cmake -E md5sum" to compute hashes without a child process and to support more hash algorithms.
2013-01-24 23:09:39 +04:00
if("${ext}" MATCHES "^\\.(${_ExternalData_REGEX_EXT})$")
string(TOUPPER "${CMAKE_MATCH_1}" algo)
Add ExternalData module Take files we previously distributed in ITK 4.3.1: CMake/ExternalData.cmake CMake/ExternalData_config.cmake.in and add them for distribution in upstream CMake. Update the copyright notice block format to follow CMake conventions.
2013-01-24 22:29:48 +04:00
else()
message(FATAL_ERROR "Unknown hash algorithm extension \"${ext}\"")
endif()
_ExternalData_download_object("${name}" "${hash}" "${algo}" obj)
# Check if file already corresponds to the object.
set(stamp "${ext}-stamp")
set(file_up_to_date 0)
if(EXISTS "${file}" AND EXISTS "${file}${stamp}")
file(READ "${file}${stamp}" f_hash)
string(STRIP "${f_hash}" f_hash)
if("${f_hash}" STREQUAL "${hash}")
#message(STATUS "File already corresponds to object")
set(file_up_to_date 1)
endif()
endif()
if(file_up_to_date)
# Touch the file to convince the build system it is up to date.
execute_process(COMMAND "${CMAKE_COMMAND}" -E touch "${file}")
else()
_ExternalData_link_or_copy("${obj}" "${file}")
endif()
# Atomically update the hash/timestamp file to record the object referenced.
_ExternalData_atomic_write("${file}${stamp}" "${hash}\n")
elseif("${ExternalData_ACTION}" STREQUAL "local")
foreach(v file name)
if(NOT DEFINED "${v}")
message(FATAL_ERROR "No \"-D${v}=\" value provided!")
endif()
endforeach()
_ExternalData_link_or_copy("${name}" "${file}")
else()
message(FATAL_ERROR "Unknown ExternalData_ACTION=[${ExternalData_ACTION}]")
endif()