CMake/Modules/FindHDF5.cmake

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Simplify CMake per-source license notices Per-source copyright/license notice headers that spell out copyright holder names and years are hard to maintain and often out-of-date or plain wrong. Precise contributor information is already maintained automatically by the version control tool. Ultimately it is the receiver of a file who is responsible for determining its licensing status, and per-source notices are merely a convenience. Therefore it is simpler and more accurate for each source to have a generic notice of the license name and references to more detailed information on copyright holders and full license terms. Our `Copyright.txt` file now contains a list of Contributors whose names appeared source-level copyright notices. It also references version control history for more precise information. Therefore we no longer need to spell out the list of Contributors in each source file notice. Replace CMake per-source copyright/license notice headers with a short description of the license and links to `Copyright.txt` and online information available from "https://cmake.org/licensing". The online URL also handles cases of modules being copied out of our source into other projects, so we can drop our notices about replacing links with full license text. Run the `Utilities/Scripts/filter-notices.bash` script to perform the majority of the replacements mechanically. Manually fix up shebang lines and trailing newlines in a few files. Manually update the notices in a few files that the script does not handle.
2016-09-27 22:01:08 +03:00
# Distributed under the OSI-approved BSD 3-Clause License. See accompanying
# file Copyright.txt or https://cmake.org/licensing for details.
#.rst:
# FindHDF5
# --------
#
# Find HDF5, a library for reading and writing self describing array data.
#
#
#
# This module invokes the HDF5 wrapper compiler that should be installed
# alongside HDF5. Depending upon the HDF5 Configuration, the wrapper
# compiler is called either h5cc or h5pcc. If this succeeds, the module
# will then call the compiler with the -show argument to see what flags
# are used when compiling an HDF5 client application.
#
# The module will optionally accept the COMPONENTS argument. If no
# COMPONENTS are specified, then the find module will default to finding
# only the HDF5 C library. If one or more COMPONENTS are specified, the
# module will attempt to find the language bindings for the specified
# components. The only valid components are C, CXX, Fortran, HL, and
# Fortran_HL. If the COMPONENTS argument is not given, the module will
# attempt to find only the C bindings.
#
# On UNIX systems, this module will read the variable
# HDF5_USE_STATIC_LIBRARIES to determine whether or not to prefer a
# static link to a dynamic link for HDF5 and all of it's dependencies.
# To use this feature, make sure that the HDF5_USE_STATIC_LIBRARIES
# variable is set before the call to find_package.
#
# To provide the module with a hint about where to find your HDF5
# installation, you can set the environment variable HDF5_ROOT. The
# Find module will then look in this path when searching for HDF5
# executables, paths, and libraries.
#
# Both the serial and parallel HDF5 wrappers are considered and the first
# directory to contain either one will be used. In the event that both appear
# in the same directory the serial version is preferentially selected. This
# behavior can be reversed by setting the variable HDF5_PREFER_PARALLEL to
# true.
#
# In addition to finding the includes and libraries required to compile
# an HDF5 client application, this module also makes an effort to find
# tools that come with the HDF5 distribution that may be useful for
# regression testing.
#
# This module will define the following variables:
#
# ::
#
# HDF5_FOUND - true if HDF5 was found on the system
# HDF5_VERSION - HDF5 version in format Major.Minor.Release
# HDF5_INCLUDE_DIRS - Location of the hdf5 includes
# HDF5_INCLUDE_DIR - Location of the hdf5 includes (deprecated)
# HDF5_DEFINITIONS - Required compiler definitions for HDF5
# HDF5_LIBRARIES - Required libraries for all requested bindings
# HDF5_HL_LIBRARIES - Required libraries for the HDF5 high level API for all
# bindings, if the HL component is enabled
#
# Available components are: C CXX Fortran and HL. For each enabled language
# binding, a corresponding HDF5_${LANG}_LIBRARIES variable will be defined.
# If the HL component is enabled, then an HDF5_${LANG}_HL_LIBRARIES will
# also be defined. With all components enabled, the following variables will be defined:
#
# ::
#
# HDF5_C_LIBRARIES - Required libraries for the HDF5 C bindings
# HDF5_CXX_LIBRARIES - Required libraries for the HDF5 C++ bindings
# HDF5_Fortran_LIBRARIES - Required libraries for the HDF5 Fortran bindings
# HDF5_C_HL_LIBRARIES - Required libraries for the high level C bindings
# HDF5_CXX_HL_LIBRARIES - Required libraries for the high level C++ bindings
# HDF5_Fortran_HL_LIBRARIES - Required libraries for the high level Fortran
# bindings.
#
# HDF5_IS_PARALLEL - Whether or not HDF5 was found with parallel IO support
# HDF5_C_COMPILER_EXECUTABLE - the path to the HDF5 C wrapper compiler
# HDF5_CXX_COMPILER_EXECUTABLE - the path to the HDF5 C++ wrapper compiler
# HDF5_Fortran_COMPILER_EXECUTABLE - the path to the HDF5 Fortran wrapper compiler
# HDF5_C_COMPILER_EXECUTABLE_NO_INTERROGATE - path to the primary C compiler
# which is also the HDF5 wrapper
# HDF5_CXX_COMPILER_EXECUTABLE_NO_INTERROGATE - path to the primary C++
# compiler which is also
# the HDF5 wrapper
# HDF5_Fortran_COMPILER_EXECUTABLE_NO_INTERROGATE - path to the primary
# Fortran compiler which
# is also the HDF5 wrapper
# HDF5_DIFF_EXECUTABLE - the path to the HDF5 dataset comparison tool
#
# The following variable can be set to guide the search for HDF5 libraries and includes:
#
# HDF5_ROOT
# This module is maintained by Will Dicharry <wdicharry@stellarscience.com>.
include(${CMAKE_CURRENT_LIST_DIR}/SelectLibraryConfigurations.cmake)
include(${CMAKE_CURRENT_LIST_DIR}/FindPackageHandleStandardArgs.cmake)
# List of the valid HDF5 components
set(HDF5_VALID_LANGUAGE_BINDINGS C CXX Fortran)
# Validate the list of find components.
set(HDF5_LANGUAGE_BINDINGS)
if(NOT HDF5_FIND_COMPONENTS)
get_property(__langs GLOBAL PROPERTY ENABLED_LANGUAGES)
foreach(__lang IN LISTS __langs)
if(__lang MATCHES "^(C|CXX|Fortran)$")
list(APPEND HDF5_LANGUAGE_BINDINGS ${__lang})
set(HDF5_FIND_REQUIRED_${__lang} True)
endif()
endforeach()
set(FIND_HL ON)
set(HDF5_FIND_REQUIRED_HL True)
else()
# add the extra specified components, ensuring that they are valid.
set(FIND_HL OFF)
foreach(component IN LISTS HDF5_FIND_COMPONENTS)
list(FIND HDF5_VALID_LANGUAGE_BINDINGS ${component} component_location)
if(NOT component_location EQUAL -1)
list(APPEND HDF5_LANGUAGE_BINDINGS ${component})
elseif(component STREQUAL "HL")
set(FIND_HL ON)
elseif(component STREQUAL "Fortran_HL") # only for compatibility
list(APPEND HDF5_LANGUAGE_BINDINGS Fortran)
set(FIND_HL ON)
set(HDF5_FIND_REQUIRED_Fortran_HL False)
set(HDF5_FIND_REQUIRED_Fortran True)
set(HDF5_FIND_REQUIRED_HL True)
else()
message(FATAL_ERROR "${component} is not a valid HDF5 component.")
endif()
endforeach()
if(NOT HDF5_LANGUAGE_BINDINGS)
get_property(__langs GLOBAL PROPERTY ENABLED_LANGUAGES)
foreach(__lang IN LISTS __langs)
if(__lang MATCHES "^(C|CXX|Fortran)$")
list(APPEND HDF5_LANGUAGE_BINDINGS ${__lang})
endif()
endforeach()
endif()
list(REMOVE_ITEM HDF5_FIND_COMPONENTS Fortran_HL) # replaced by Fortran and HL
list(REMOVE_DUPLICATES HDF5_LANGUAGE_BINDINGS)
endif()
# Determine whether to search for serial or parallel executable first
if(HDF5_PREFER_PARALLEL)
set(HDF5_C_COMPILER_NAMES h5pcc h5cc)
set(HDF5_CXX_COMPILER_NAMES h5pc++ h5c++)
set(HDF5_Fortran_COMPILER_NAMES h5pfc h5fc)
else()
set(HDF5_C_COMPILER_NAMES h5cc h5pcc)
set(HDF5_CXX_COMPILER_NAMES h5c++ h5pc++)
set(HDF5_Fortran_COMPILER_NAMES h5fc h5pfc)
endif()
# We may have picked up some duplicates in various lists during the above
# process for the language bindings (both the C and C++ bindings depend on
# libz for example). Remove the duplicates. It appears that the default
# CMake behavior is to remove duplicates from the end of a list. However,
# for link lines, this is incorrect since unresolved symbols are searched
# for down the link line. Therefore, we reverse the list, remove the
# duplicates, and then reverse it again to get the duplicates removed from
# the beginning.
macro(_HDF5_remove_duplicates_from_beginning _list_name)
if(${_list_name})
list(REVERSE ${_list_name})
list(REMOVE_DUPLICATES ${_list_name})
list(REVERSE ${_list_name})
endif()
endmacro()
# Test first if the current compilers automatically wrap HDF5
function(_HDF5_test_regular_compiler_C success version is_parallel)
set(scratch_directory
${CMAKE_CURRENT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/hdf5)
if(NOT ${success} OR
NOT EXISTS ${scratch_directory}/compiler_has_h5_c)
set(test_file ${scratch_directory}/cmake_hdf5_test.c)
file(WRITE ${test_file}
"#include <hdf5.h>\n"
"#include <hdf5_hl.h>\n"
"int main(void) {\n"
" char const* info_ver = \"INFO\" \":\" H5_VERSION;\n"
" hid_t fid;\n"
" fid = H5Fcreate(\"foo.h5\",H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT);\n"
" return 0;\n"
"}")
try_compile(${success} ${scratch_directory} ${test_file}
COPY_FILE ${scratch_directory}/compiler_has_h5_c
)
endif()
if(${success})
file(STRINGS ${scratch_directory}/compiler_has_h5_c INFO_VER
REGEX "^INFO:([0-9]+\\.[0-9]+\\.[0-9]+)(-patch([0-9]+))?"
)
string(REGEX MATCH "^INFO:([0-9]+\\.[0-9]+\\.[0-9]+)(-patch([0-9]+))?"
INFO_VER "${INFO_VER}"
)
set(${version} ${CMAKE_MATCH_1})
if(CMAKE_MATCH_3)
set(${version} ${HDF5_CXX_VERSION}.${CMAKE_MATCH_3})
endif()
set(${version} ${${version}} PARENT_SCOPE)
execute_process(COMMAND ${CMAKE_C_COMPILER} -showconfig
OUTPUT_VARIABLE config_output
ERROR_VARIABLE config_error
RESULT_VARIABLE config_result
)
if(config_output MATCHES "Parallel HDF5: yes")
set(${is_parallel} TRUE PARENT_SCOPE)
else()
set(${is_parallel} FALSE PARENT_SCOPE)
endif()
endif()
endfunction()
function(_HDF5_test_regular_compiler_CXX success version is_parallel)
set(scratch_directory ${CMAKE_CURRENT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/hdf5)
if(NOT ${success} OR
NOT EXISTS ${scratch_directory}/compiler_has_h5_cxx)
set(test_file ${scratch_directory}/cmake_hdf5_test.cxx)
file(WRITE ${test_file}
"#include <H5Cpp.h>\n"
"#ifndef H5_NO_NAMESPACE\n"
"using namespace H5;\n"
"#endif\n"
"int main(int argc, char **argv) {\n"
" char const* info_ver = \"INFO\" \":\" H5_VERSION;\n"
" H5File file(\"foo.h5\", H5F_ACC_TRUNC);\n"
" return 0;\n"
"}")
try_compile(${success} ${scratch_directory} ${test_file}
COPY_FILE ${scratch_directory}/compiler_has_h5_cxx
)
endif()
if(${success})
file(STRINGS ${scratch_directory}/compiler_has_h5_cxx INFO_VER
REGEX "^INFO:([0-9]+\\.[0-9]+\\.[0-9]+)(-patch([0-9]+))?"
)
string(REGEX MATCH "^INFO:([0-9]+\\.[0-9]+\\.[0-9]+)(-patch([0-9]+))?"
INFO_VER "${INFO_VER}"
)
set(${version} ${CMAKE_MATCH_1})
if(CMAKE_MATCH_3)
set(${version} ${HDF5_CXX_VERSION}.${CMAKE_MATCH_3})
endif()
set(${version} ${${version}} PARENT_SCOPE)
execute_process(COMMAND ${CMAKE_CXX_COMPILER} -showconfig
OUTPUT_VARIABLE config_output
ERROR_VARIABLE config_error
RESULT_VARIABLE config_result
)
if(config_output MATCHES "Parallel HDF5: yes")
set(${is_parallel} TRUE PARENT_SCOPE)
else()
set(${is_parallel} FALSE PARENT_SCOPE)
endif()
endif()
endfunction()
function(_HDF5_test_regular_compiler_Fortran success is_parallel)
if(NOT ${success})
set(scratch_directory
${CMAKE_CURRENT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/hdf5)
set(test_file ${scratch_directory}/cmake_hdf5_test.f90)
file(WRITE ${test_file}
"program hdf5_hello\n"
" use hdf5\n"
" use h5lt\n"
" use h5ds\n"
" integer error\n"
" call h5open_f(error)\n"
" call h5close_f(error)\n"
"end\n")
try_compile(${success} ${scratch_directory} ${test_file})
if(${success})
execute_process(COMMAND ${CMAKE_Fortran_COMPILER} -showconfig
OUTPUT_VARIABLE config_output
ERROR_VARIABLE config_error
RESULT_VARIABLE config_result
)
if(config_output MATCHES "Parallel HDF5: yes")
set(${is_parallel} TRUE PARENT_SCOPE)
else()
set(${is_parallel} FALSE PARENT_SCOPE)
endif()
endif()
endif()
endfunction()
# Invoke the HDF5 wrapper compiler. The compiler return value is stored to the
# return_value argument, the text output is stored to the output variable.
macro( _HDF5_invoke_compiler language output return_value version is_parallel)
set(${version})
if(HDF5_USE_STATIC_LIBRARIES)
set(lib_type_args -noshlib)
else()
set(lib_type_args -shlib)
endif()
set(scratch_dir ${CMAKE_CURRENT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/hdf5)
if("${language}" STREQUAL "C")
set(test_file ${scratch_dir}/cmake_hdf5_test.c)
elseif("${language}" STREQUAL "CXX")
set(test_file ${scratch_dir}/cmake_hdf5_test.cxx)
elseif("${language}" STREQUAL "Fortran")
set(test_file ${scratch_dir}/cmake_hdf5_test.f90)
endif()
exec_program( ${HDF5_${language}_COMPILER_EXECUTABLE}
ARGS -show ${lib_type_args} ${test_file}
OUTPUT_VARIABLE ${output}
RETURN_VALUE ${return_value}
)
if(NOT ${${return_value}} EQUAL 0)
message(STATUS
"Unable to determine HDF5 ${language} flags from HDF5 wrapper.")
endif()
exec_program( ${HDF5_${language}_COMPILER_EXECUTABLE}
ARGS -showconfig
OUTPUT_VARIABLE config_output
RETURN_VALUE config_return
)
if(NOT ${return_value} EQUAL 0)
message( STATUS
"Unable to determine HDF5 ${language} version from HDF5 wrapper.")
endif()
string(REGEX MATCH "HDF5 Version: ([a-zA-Z0-9\\.\\-]*)" version_match "${config_output}")
if(version_match)
string(REPLACE "HDF5 Version: " "" ${version} "${version_match}")
string(REPLACE "-patch" "." ${version} "${${version}}")
endif()
if(config_output MATCHES "Parallel HDF5: yes")
set(${is_parallel} TRUE)
else()
set(${is_parallel} FALSE)
endif()
endmacro()
# Parse a compile line for definitions, includes, library paths, and libraries.
macro( _HDF5_parse_compile_line
compile_line_var
include_paths
definitions
library_paths
libraries
libraries_hl)
# Match the include paths
set( RE " -I *([^\" ]+|\"[^\"]+\")")
string( REGEX MATCHALL "${RE}" include_path_flags "${${compile_line_var}}")
foreach( IPATH IN LISTS include_path_flags )
string( REGEX REPLACE "${RE}" "\\1" IPATH "${IPATH}" )
list( APPEND ${include_paths} ${IPATH} )
endforeach()
# Match the definitions
set( RE " -D([^ ]*)")
string( REGEX MATCHALL "${RE}" definition_flags "${${compile_line_var}}" )
foreach( DEF IN LISTS definition_flags )
string( STRIP "${DEF}" DEF )
list( APPEND ${definitions} ${DEF} )
endforeach()
# Match the library paths
set( RE " -L *([^\" ]+|\"[^\"]+\")")
string( REGEX MATCHALL "${RE}" library_path_flags "${${compile_line_var}}")
foreach( LPATH IN LISTS library_path_flags )
string( REGEX REPLACE "${RE}" "\\1" LPATH "${LPATH}" )
list( APPEND ${library_paths} ${LPATH} )
endforeach()
# now search for the lib names specified in the compile line (match -l...)
# match only -l's preceded by a space or comma
set( RE " -l *([^\" ]+|\"[^\"]+\")")
string( REGEX MATCHALL "${RE}" library_name_flags "${${compile_line_var}}")
foreach( LNAME IN LISTS library_name_flags )
string( REGEX REPLACE "${RE}" "\\1" LNAME "${LNAME}" )
if(LNAME MATCHES ".*hl")
list(APPEND ${libraries_hl} ${LNAME})
else()
list(APPEND ${libraries} ${LNAME})
endif()
endforeach()
# now search for full library paths with no flags
set( RE " ([^\" ]+|\"[^\"]+\")")
string( REGEX MATCHALL "${RE}" library_name_noflags "${${compile_line_var}}")
foreach( LIB IN LISTS library_name_noflags )
string( REGEX REPLACE "${RE}" "\\1" LIB "${LIB}" )
get_filename_component(LIB "${LIB}" ABSOLUTE)
if(NOT EXISTS ${LIB} OR IS_DIRECTORY ${LIB})
continue()
endif()
get_filename_component(LPATH ${LIB} DIRECTORY)
get_filename_component(LNAME ${LIB} NAME_WE)
string( REGEX REPLACE "^lib" "" LNAME ${LNAME} )
list( APPEND ${library_paths} ${LPATH} )
if(LNAME MATCHES ".*hl")
list(APPEND ${libraries_hl} ${LNAME})
else()
list(APPEND ${libraries} ${LNAME})
endif()
endforeach()
endmacro()
if(NOT HDF5_ROOT)
set(HDF5_ROOT $ENV{HDF5_ROOT})
endif()
# Try to find HDF5 using an installed hdf5-config.cmake
if(NOT HDF5_FOUND AND NOT HDF5_ROOT)
find_package(HDF5 QUIET NO_MODULE)
if( HDF5_FOUND)
set(HDF5_IS_PARALLEL ${HDF5_ENABLE_PARALLEL})
set(HDF5_INCLUDE_DIRS ${HDF5_INCLUDE_DIR})
set(HDF5_LIBRARIES)
set(HDF5_C_TARGET hdf5)
set(HDF5_C_HL_TARGET hdf5_hl)
set(HDF5_CXX_TARGET hdf5_cpp)
set(HDF5_CXX_HL_TARGET hdf5_hl_cpp)
set(HDF5_Fortran_TARGET hdf5_fortran)
set(HDF5_Fortran_HL_TARGET hdf5_hl_fortran)
if(HDF5_USE_STATIC_LIBRARIES)
set(_suffix "-static")
else()
set(_suffix "-shared")
endif()
foreach(_lang ${HDF5_LANGUAGE_BINDINGS})
#Older versions of hdf5 don't have a static/shared suffix so
#if we detect that occurrence clear the suffix
if(_suffix AND NOT TARGET ${HDF5_${_lang}_TARGET}${_suffix})
if(NOT TARGET ${HDF5_${_lang}_TARGET})
#cant find this component with our without the suffix
#so bail out, and let the following locate HDF5
set(HDF5_FOUND FALSE)
break()
endif()
set(_suffix "")
endif()
get_target_property(_lang_location ${HDF5_${_lang}_TARGET}${_suffix} LOCATION)
if( _lang_location )
set(HDF5_${_lang}_LIBRARY ${_lang_location} CACHE PATH
"HDF5 ${_lang} library" )
mark_as_advanced(HDF5_${_lang}_LIBRARY)
list(APPEND HDF5_LIBRARIES ${HDF5_${_lang}_LIBRARY})
set(HDF5_${_lang}_LIBRARIES ${HDF5_${_lang}_LIBRARY})
set(HDF5_${_lang}_FOUND True)
endif()
if(FIND_HL)
get_target_property(_lang_hl_location ${HDF5_${_lang}_HL_TARGET}${_suffix} LOCATION)
if( _lang_hl_location )
set(HDF5_${_lang}_HL_LIBRARY ${_lang_hl_location} CACHE PATH
"HDF5 ${_lang} HL library" )
mark_as_advanced(HDF5_${_lang}_HL_LIBRARY)
list(APPEND HDF5_HL_LIBRARIES ${HDF5_${_lang}_HL_LIBRARY})
set(HDF5_${_lang}_HL_LIBRARIES ${HDF5_${_lang}_HL_LIBRARY})
set(HDF5_HL_FOUND True)
endif()
endif()
endforeach()
endif()
endif()
if(NOT HDF5_FOUND AND NOT HDF5_ROOT)
set(_HDF5_NEED_TO_SEARCH False)
set(HDF5_COMPILER_NO_INTERROGATE True)
# Only search for languages we've enabled
foreach(__lang IN LISTS HDF5_LANGUAGE_BINDINGS)
# First check to see if our regular compiler is one of wrappers
if(__lang STREQUAL "C")
_HDF5_test_regular_compiler_C(
HDF5_${__lang}_COMPILER_NO_INTERROGATE
HDF5_${__lang}_VERSION
HDF5_${__lang}_IS_PARALLEL)
elseif(__lang STREQUAL "CXX")
_HDF5_test_regular_compiler_CXX(
HDF5_${__lang}_COMPILER_NO_INTERROGATE
HDF5_${__lang}_VERSION
HDF5_${__lang}_IS_PARALLEL)
elseif(__lang STREQUAL "Fortran")
_HDF5_test_regular_compiler_Fortran(
HDF5_${__lang}_COMPILER_NO_INTERROGATE
HDF5_${__lang}_IS_PARALLEL)
else()
continue()
endif()
if(HDF5_${__lang}_COMPILER_NO_INTERROGATE)
message(STATUS "HDF5: Using hdf5 compiler wrapper for all ${__lang} compiling")
set(HDF5_${__lang}_FOUND True)
set(HDF5_${__lang}_COMPILER_EXECUTABLE_NO_INTERROGATE
"${CMAKE_${__lang}_COMPILER}"
CACHE FILEPATH "HDF5 ${__lang} compiler wrapper")
set(HDF5_${__lang}_DEFINITIONS)
set(HDF5_${__lang}_INCLUDE_DIRS)
set(HDF5_${__lang}_LIBRARIES)
set(HDF5_${__lang}_HL_LIBRARIES)
mark_as_advanced(HDF5_${__lang}_COMPILER_EXECUTABLE_NO_INTERROGATE)
mark_as_advanced(HDF5_${__lang}_DEFINITIONS)
mark_as_advanced(HDF5_${__lang}_INCLUDE_DIRS)
mark_as_advanced(HDF5_${__lang}_LIBRARIES)
mark_as_advanced(HDF5_${__lang}_HL_LIBRARIES)
set(HDF5_${__lang}_FOUND True)
set(HDF5_HL_FOUND True)
else()
set(HDF5_COMPILER_NO_INTERROGATE False)
# If this language isn't using the wrapper, then try to seed the
# search options with the wrapper
find_program(HDF5_${__lang}_COMPILER_EXECUTABLE
NAMES ${HDF5_${__lang}_COMPILER_NAMES} NAMES_PER_DIR
PATH_SUFFIXES bin Bin
DOC "HDF5 ${__lang} Wrapper compiler. Used only to detect HDF5 compile flags."
)
mark_as_advanced( HDF5_${__lang}_COMPILER_EXECUTABLE )
unset(HDF5_${__lang}_COMPILER_NAMES)
if(HDF5_${__lang}_COMPILER_EXECUTABLE)
_HDF5_invoke_compiler(${__lang} HDF5_${__lang}_COMPILE_LINE
HDF5_${__lang}_RETURN_VALUE HDF5_${__lang}_VERSION HDF5_${__lang}_IS_PARALLEL)
if(HDF5_${__lang}_RETURN_VALUE EQUAL 0)
message(STATUS "HDF5: Using hdf5 compiler wrapper to determine ${__lang} configuration")
_HDF5_parse_compile_line( HDF5_${__lang}_COMPILE_LINE
HDF5_${__lang}_INCLUDE_DIRS
HDF5_${__lang}_DEFINITIONS
HDF5_${__lang}_LIBRARY_DIRS
HDF5_${__lang}_LIBRARY_NAMES
HDF5_${__lang}_HL_LIBRARY_NAMES
)
set(HDF5_${__lang}_LIBRARIES)
set(_HDF5_CMAKE_FIND_LIBRARY_SUFFIXES ${CMAKE_FIND_LIBRARY_SUFFIXES})
if(HDF5_USE_STATIC_LIBRARIES)
set(CMAKE_FIND_LIBRARY_SUFFIXES ${CMAKE_STATIC_LIBRARY_SUFFIX})
else()
set(CMAKE_FIND_LIBRARY_SUFFIXES ${CMAKE_SHARED_LIBRARY_SUFFIX})
endif()
foreach(L IN LISTS HDF5_${__lang}_LIBRARY_NAMES)
find_library(HDF5_${__lang}_LIBRARY_${L} ${L} ${HDF5_${__lang}_LIBRARY_DIRS})
if(HDF5_${__lang}_LIBRARY_${L})
list(APPEND HDF5_${__lang}_LIBRARIES ${HDF5_${__lang}_LIBRARY_${L}})
else()
list(APPEND HDF5_${__lang}_LIBRARIES ${L})
endif()
endforeach()
if(FIND_HL)
set(HDF5_${__lang}_HL_LIBRARIES)
foreach(L IN LISTS HDF5_${__lang}_HL_LIBRARY_NAMES)
find_library(HDF5_${__lang}_LIBRARY_${L} ${L} ${HDF5_${__lang}_LIBRARY_DIRS})
if(HDF5_${__lang}_LIBRARY_${L})
list(APPEND HDF5_${__lang}_HL_LIBRARIES ${HDF5_${__lang}_LIBRARY_${L}})
else()
list(APPEND HDF5_${__lang}_HL_LIBRARIES ${L})
endif()
endforeach()
set(HDF5_HL_FOUND True)
endif()
set(CMAKE_FIND_LIBRARY_SUFFIXES ${_HDF5_CMAKE_FIND_LIBRARY_SUFFIXES})
set(HDF5_${__lang}_FOUND True)
mark_as_advanced(HDF5_${__lang}_DEFINITIONS)
mark_as_advanced(HDF5_${__lang}_INCLUDE_DIRS)
mark_as_advanced(HDF5_${__lang}_LIBRARIES)
_HDF5_remove_duplicates_from_beginning(HDF5_${__lang}_DEFINITIONS)
_HDF5_remove_duplicates_from_beginning(HDF5_${__lang}_INCLUDE_DIRS)
_HDF5_remove_duplicates_from_beginning(HDF5_${__lang}_LIBRARIES)
_HDF5_remove_duplicates_from_beginning(HDF5_${__lang}_HL_LIBRARIES)
else()
set(_HDF5_NEED_TO_SEARCH True)
endif()
else()
set(_HDF5_NEED_TO_SEARCH True)
endif()
endif()
if(HDF5_${__lang}_VERSION)
if(NOT HDF5_VERSION)
set(HDF5_VERSION ${HDF5_${__lang}_VERSION})
elseif(NOT HDF5_VERSION VERSION_EQUAL HDF5_${__lang}_VERSION)
message(WARNING "HDF5 Version found for language ${__lang}, ${HDF5_${__lang}_VERSION} is different than previously found version ${HDF5_VERSION}")
endif()
endif()
if(DEFINED HDF5_${__lang}_IS_PARALLEL)
if(NOT DEFINED HDF5_IS_PARALLEL)
set(HDF5_IS_PARALLEL ${HDF5_${__lang}_IS_PARALLEL})
elseif(NOT HDF5_IS_PARALLEL AND HDF5_${__lang}_IS_PARALLEL)
message(WARNING "HDF5 found for language ${__lang} is parallel but previously found language is not parallel.")
elseif(HDF5_IS_PARALLEL AND NOT HDF5_${__lang}_IS_PARALLEL)
message(WARNING "HDF5 found for language ${__lang} is not parallel but previously found language is parallel.")
endif()
endif()
endforeach()
else()
set(_HDF5_NEED_TO_SEARCH True)
endif()
if(NOT HDF5_FOUND AND HDF5_COMPILER_NO_INTERROGATE)
# No arguments necessary, all languages can use the compiler wrappers
set(HDF5_FOUND True)
set(HDF5_METHOD "Included by compiler wrappers")
set(HDF5_REQUIRED_VARS HDF5_METHOD)
elseif(NOT HDF5_FOUND AND NOT _HDF5_NEED_TO_SEARCH)
# Compiler wrappers aren't being used by the build but were found and used
# to determine necessary include and library flags
set(HDF5_INCLUDE_DIRS)
set(HDF5_LIBRARIES)
set(HDF5_HL_LIBRARIES)
foreach(__lang IN LISTS HDF5_LANGUAGE_BINDINGS)
if(HDF5_${__lang}_FOUND)
if(NOT HDF5_${__lang}_COMPILER_NO_INTERROGATE)
list(APPEND HDF5_DEFINITIONS ${HDF5_${__lang}_DEFINITIONS})
list(APPEND HDF5_INCLUDE_DIRS ${HDF5_${__lang}_INCLUDE_DIRS})
list(APPEND HDF5_LIBRARIES ${HDF5_${__lang}_LIBRARIES})
if(FIND_HL)
list(APPEND HDF5_HL_LIBRARIES ${HDF5_${__lang}_HL_LIBRARIES})
endif()
endif()
endif()
endforeach()
_HDF5_remove_duplicates_from_beginning(HDF5_DEFINITIONS)
_HDF5_remove_duplicates_from_beginning(HDF5_INCLUDE_DIRS)
_HDF5_remove_duplicates_from_beginning(HDF5_LIBRARIES)
_HDF5_remove_duplicates_from_beginning(HDF5_HL_LIBRARIES)
set(HDF5_FOUND True)
set(HDF5_REQUIRED_VARS HDF5_LIBRARIES)
if(FIND_HL)
list(APPEND HDF5_REQUIRED_VARS HDF5_HL_LIBRARIES)
endif()
endif()
if(HDF5_ROOT)
set(SEARCH_OPTS NO_DEFAULT_PATH)
endif()
find_program( HDF5_DIFF_EXECUTABLE
NAMES h5diff
HINTS ${HDF5_ROOT}
PATH_SUFFIXES bin Bin
${SEARCH_OPTS}
DOC "HDF5 file differencing tool." )
mark_as_advanced( HDF5_DIFF_EXECUTABLE )
if( NOT HDF5_FOUND )
# seed the initial lists of libraries to find with items we know we need
set(HDF5_C_LIBRARY_NAMES hdf5)
set(HDF5_C_HL_LIBRARY_NAMES hdf5_hl)
set(HDF5_CXX_LIBRARY_NAMES hdf5_cpp ${HDF5_C_LIBRARY_NAMES})
set(HDF5_CXX_HL_LIBRARY_NAMES hdf5_hl_cpp ${HDF5_C_HL_LIBRARY_NAMES} ${HDF5_CXX_LIBRARY_NAMES})
set(HDF5_Fortran_LIBRARY_NAMES hdf5_fortran ${HDF5_C_LIBRARY_NAMES})
set(HDF5_Fortran_HL_LIBRARY_NAMES hdf5hl_fortran ${HDF5_C_HL_LIBRARY_NAMES} ${HDF5_Fortran_LIBRARY_NAMES})
foreach(__lang IN LISTS HDF5_LANGUAGE_BINDINGS)
# find the HDF5 include directories
if(LANGUAGE STREQUAL "Fortran")
set(HDF5_INCLUDE_FILENAME hdf5.mod)
elseif(LANGUAGE STREQUAL "CXX")
set(HDF5_INCLUDE_FILENAME H5Cpp.h)
else()
set(HDF5_INCLUDE_FILENAME hdf5.h)
endif()
find_path(HDF5_${__lang}_INCLUDE_DIR ${HDF5_INCLUDE_FILENAME}
HINTS ${HDF5_ROOT}
PATHS $ENV{HOME}/.local/include
PATH_SUFFIXES include Include
${SEARCH_OPTS}
)
mark_as_advanced(HDF5_${LANGUAGE}_INCLUDE_DIR)
list(APPEND HDF5_INCLUDE_DIRS ${HDF5_${__lang}_INCLUDE_DIR})
# find the HDF5 libraries
foreach(LIB IN LISTS HDF5_${__lang}_LIBRARY_NAMES)
if(UNIX AND HDF5_USE_STATIC_LIBRARIES)
# According to bug 1643 on the CMake bug tracker, this is the
# preferred method for searching for a static library.
# See https://gitlab.kitware.com/cmake/cmake/issues/1643. We search
# first for the full static library name, but fall back to a
# generic search on the name if the static search fails.
set( THIS_LIBRARY_SEARCH_DEBUG
lib${LIB}d.a lib${LIB}_debug.a ${LIB}d ${LIB}_debug
lib${LIB}d-static.a lib${LIB}_debug-static.a ${LIB}d-static ${LIB}_debug-static )
set( THIS_LIBRARY_SEARCH_RELEASE lib${LIB}.a ${LIB} lib${LIB}-static.a ${LIB}-static)
else()
set( THIS_LIBRARY_SEARCH_DEBUG ${LIB}d ${LIB}_debug ${LIB}d-shared ${LIB}_debug-shared)
set( THIS_LIBRARY_SEARCH_RELEASE ${LIB} ${LIB}-shared)
endif()
find_library(HDF5_${LIB}_LIBRARY_DEBUG
NAMES ${THIS_LIBRARY_SEARCH_DEBUG}
HINTS ${HDF5_ROOT} PATH_SUFFIXES lib Lib
${SEARCH_OPTS}
)
find_library( HDF5_${LIB}_LIBRARY_RELEASE
NAMES ${THIS_LIBRARY_SEARCH_RELEASE}
HINTS ${HDF5_ROOT} PATH_SUFFIXES lib Lib
${SEARCH_OPTS}
)
select_library_configurations( HDF5_${LIB} )
list(APPEND HDF5_${__lang}_LIBRARIES ${HDF5_${LIB}_LIBRARY})
endforeach()
if(HDF5_${__lang}_LIBRARIES)
set(HDF5_${__lang}_FOUND True)
endif()
# Append the libraries for this language binding to the list of all
# required libraries.
list(APPEND HDF5_LIBRARIES ${HDF5_${__lang}_LIBRARIES})
if(FIND_HL)
foreach(LIB IN LISTS HDF5_${__lang}_HL_LIBRARY_NAMES)
if(UNIX AND HDF5_USE_STATIC_LIBRARIES)
# According to bug 1643 on the CMake bug tracker, this is the
# preferred method for searching for a static library.
# See https://gitlab.kitware.com/cmake/cmake/issues/1643. We search
# first for the full static library name, but fall back to a
# generic search on the name if the static search fails.
set( THIS_LIBRARY_SEARCH_DEBUG
lib${LIB}d.a lib${LIB}_debug.a ${LIB}d ${LIB}_debug
lib${LIB}d-static.a lib${LIB}_debug-static.a ${LIB}d-static ${LIB}_debug-static )
set( THIS_LIBRARY_SEARCH_RELEASE lib${LIB}.a ${LIB} lib${LIB}-static.a ${LIB}-static)
else()
set( THIS_LIBRARY_SEARCH_DEBUG ${LIB}d ${LIB}_debug ${LIB}d-shared ${LIB}_debug-shared)
set( THIS_LIBRARY_SEARCH_RELEASE ${LIB} ${LIB}-shared)
endif()
find_library(HDF5_${LIB}_LIBRARY_DEBUG
NAMES ${THIS_LIBRARY_SEARCH_DEBUG}
HINTS ${HDF5_ROOT} PATH_SUFFIXES lib Lib
${SEARCH_OPTS}
)
find_library( HDF5_${LIB}_LIBRARY_RELEASE
NAMES ${THIS_LIBRARY_SEARCH_RELEASE}
HINTS ${HDF5_ROOT} PATH_SUFFIXES lib Lib
${SEARCH_OPTS}
)
select_library_configurations( HDF5_${LIB} )
list(APPEND HDF5_${__lang}_HL_LIBRARIES ${HDF5_${LIB}_LIBRARY})
endforeach()
# Append the libraries for this language binding to the list of all
# required libraries.
list(APPEND HDF5_HL_LIBRARIES ${HDF5_${__lang}_HL_LIBRARIES})
endif()
endforeach()
if(FIND_HL AND HDF5_HL_LIBRARIES)
set(HDF5_HL_FOUND True)
endif()
_HDF5_remove_duplicates_from_beginning(HDF5_INCLUDE_DIRS)
_HDF5_remove_duplicates_from_beginning(HDF5_LIBRARIES)
_HDF5_remove_duplicates_from_beginning(HDF5_HL_LIBRARIES)
# If the HDF5 include directory was found, open H5pubconf.h to determine if
# HDF5 was compiled with parallel IO support
set( HDF5_IS_PARALLEL FALSE )
set( HDF5_VERSION "" )
foreach( _dir IN LISTS HDF5_INCLUDE_DIRS )
foreach(_hdr "${_dir}/H5pubconf.h" "${_dir}/H5pubconf-64.h" "${_dir}/H5pubconf-32.h")
if( EXISTS "${_hdr}" )
file( STRINGS "${_hdr}"
HDF5_HAVE_PARALLEL_DEFINE
REGEX "HAVE_PARALLEL 1" )
if( HDF5_HAVE_PARALLEL_DEFINE )
set( HDF5_IS_PARALLEL TRUE )
endif()
unset(HDF5_HAVE_PARALLEL_DEFINE)
file( STRINGS "${_hdr}"
HDF5_VERSION_DEFINE
REGEX "^[ \t]*#[ \t]*define[ \t]+H5_VERSION[ \t]+" )
if( "${HDF5_VERSION_DEFINE}" MATCHES
"H5_VERSION[ \t]+\"([0-9]+\\.[0-9]+\\.[0-9]+)(-patch([0-9]+))?\"" )
set( HDF5_VERSION "${CMAKE_MATCH_1}" )
if( CMAKE_MATCH_3 )
set( HDF5_VERSION ${HDF5_VERSION}.${CMAKE_MATCH_3})
endif()
endif()
unset(HDF5_VERSION_DEFINE)
endif()
endforeach()
endforeach()
set( HDF5_IS_PARALLEL ${HDF5_IS_PARALLEL} CACHE BOOL
"HDF5 library compiled with parallel IO support" )
mark_as_advanced( HDF5_IS_PARALLEL )
# For backwards compatibility we set HDF5_INCLUDE_DIR to the value of
# HDF5_INCLUDE_DIRS
if( HDF5_INCLUDE_DIRS )
set( HDF5_INCLUDE_DIR "${HDF5_INCLUDE_DIRS}" )
endif()
set(HDF5_REQUIRED_VARS HDF5_LIBRARIES HDF5_INCLUDE_DIRS)
if(FIND_HL)
list(APPEND HDF5_REQUIRED_VARS HDF5_HL_LIBRARIES)
endif()
endif()
# If HDF5_REQUIRED_VARS is empty at this point, then it's likely that
# something external is trying to explicitly pass already found
# locations
if(NOT HDF5_REQUIRED_VARS)
set(HDF5_REQUIRED_VARS HDF5_LIBRARIES HDF5_INCLUDE_DIRS)
endif()
find_package_handle_standard_args(HDF5
REQUIRED_VARS ${HDF5_REQUIRED_VARS}
VERSION_VAR HDF5_VERSION
HANDLE_COMPONENTS
)